Tatjana Walter, Arman Beyraghdar Kashkooli, Katarina Cankar and Volker F. Wendisch from the INDIE teams of Bielefeld University and Wageningen Plant Research published on the physiological response of Corynebacterium glutamicum to indole together with Kareen H. Veldmann, Susanne Götker, Tobias Busche, Christian Rückert and Jannik Paulus from Bielefeld University. The work combined growth and RNAseq experiments coupled with adaptive laboratory evolution (ALE), genome sequencing to reveal candidate genes and reverse genetics to identify genes causing indole resistance. Indole was shown to reduce iron in the cultivation medium by a chemical reaction. Moreover, a transcriptional regulator of the iolT2-rhcM2D2 operon was identified and named IhtR for 1,2,4-trihydroxybenzene, hydroquinone, and indole responsive repressor. The insight into chemical and gene regulatory effects by indole will guide efforts by the INDIE project to develop a fermentative indole production process.
Walter T, Veldmann KH, Götker S, Busche T, Rückert C, Kashkooli AB, Paulus J, Cankar K and Wendisch VF (2020) Physiological Response of Corynebacterium glutamicum to indole. Microorg. 8: 1945. https://doi.org/10.3390/microorganisms8121945

A team of 10 authors with Tatjana Walter, Katarina Cankar, Lenny Ferrer, Melanie Mindt and Volker F. Wendisch from the INDIE teams of Bielefeld University and Wageningen Plant Research published on fermentative production of N-methylanthranilate together with Nour Al Medani, Arthur Burgardt, Anastasia Kerbs and Joe Max Risse from Bielefeld University and Jin-Ho Lee from Kyungsung University. Product formation relied on the heterologous SAM-dependent N-methyltransferase from the plant herb-of-grace (Ruta graveolens). Moreover, strain engineering enabled optimized provision of anthranilate as precursor. This is a milestone of the INDIE project.
Walter T, Al Medani N, Burgardt A, Cankar K., Ferrer L, Kerbs A, Lee J-H, Mindt M, Risse JR and Wendisch VF (2020) Fermentative N-methylanthranilate production by engineered Corynebacterium glutamicum. Microorg. 8: 866. https://doi.org/10.3390/microorganisms8060866

Volker F. Wendisch from the INDIE team of Bielefeld University and Prof. Jin-Ho Lee from Kyungsung University, Busan, South Korea, contributed to the book "Corynebacterium glutamicum – Biology and Biotechnology" edited by M. Inui and K. Toyoda, by reviewing C. glutamicum metabolic engineering from the classical, genetic engineering, systems biology eras to the era of synthetic biology for strain development and by forecasting the impact of the most recent methods such as CRISPR technology and adaptive laboratory evolution.
Wendisch VF, Lee J-H (2020) Metabolic engineering in Corynebacterium glutamicum. In: Corynebacterium glutamicum – Biology and Biotechnology. Inui M, Toyoda K (Eds); Microbiology Monographs. Springer Nature Switzerland. pp. 287-322. https://doi.org/10.1007/978-3-030-39267-3_10

Melanie Mindt, Tatjana Walter and Volker F. Wendisch from the INDIE teams of Bielefeld University and Wageningen Plant Research and Pierre Kugler reviewed N-functionalization of amines by biocatalysis and fermentation. Strains overproducing precursors can be equipped with N-functionalizing enzymes such as imine or ketimine reductases, opine or amino acid dehydrogenases, N-hydroxylases, N-acyltransferase or polyamine synthetases for overproduction of building blocks used for the preparation of bioactive molecules, such as N-methyl-L-alanine, N-methyl-L-glutamate, or L-theanine, a flavor-enhancing compound.
Mindt M, Walter T, Kugler P and Wendisch VF (2020) Microbial engineering for production of N-functionalized amino acids and amines. Biotechnol. J. in press. doi: https://doi.org/10.1002/biot.201900451

Volker F. Wendisch from the INDIE team of Bielefeld University contributed to the book "Minimal Cells: Design, Construction, Biotechnological Applications" edited by A. R. Lara and G. Gosset, by reviewing how chassis cells can be developed such that they are as fit as wild type regarding a chosen target function, e.g. growth in glucose minimal medium, while having to invest less to maintain gene functions not required under theses conditions. Some biotechnological applications are given. In the project INDIE we are using strains with reduced genome contents.
Wendisch VF (2020) Genome-Reduced Corynebacterium glutamicum Fit for Biotechnological Applications. In: Lara A., Gosset G. (eds) Minimal Cells: Design, Construction, Biotechnological Applications. Springer, Cham. doi: https://doi.org/10.1007/978-3-030-31897-0_4

Volker F. Wendisch from the INDIE team of Bielefeld University and Elvira Sgobba reviewed design, construction and application of synthetic microbial consortia to sustainable biotechnological production. Examples included production of aromatic compounds such as phenylpropanoids from sugars. Strategies to divide labour between two or more species in a synthetic microbial consortium to allow to access complex substrates or for synthesis via complex linear or converging multi-step routes were highlighted. The review adresses challenges and implications for adaptive laboratory evolution for future improvement of synthetic consortia.
Sgobba E and Wendisch VF (2020) Synthetic microbial consortia for small molecule production. Curr. Opin. Biotechnol. 62:72-79. doi: https://doi.org/10.1016/j.copbio.2019.09.011

Volker F. Wendisch from the INDIE team of Bielefeld University reviewed recent advances of metabolic engineering for amino acid production. Prospects driven by technological push and market pull altering this field are exemplified for specialty proteinogenic amino acids, cyclic amino acids and omega-amino acids. The review also covers amino acid derivatives that may be obtained by - amongst others - hydroxylation, halogenation and N-methylation.
Wendisch VF (2019) Metabolic engineering advances and prospects for amino acid production. Metab. Eng. 58: 17-34. doi: https://doi.org/10.1016/j.ymben.2019.03.008

Axxence produces natural flavour ingredients using plants as crude enzyme sources. The following video shows the biocatalytic production process for the manufacturing of natural 2,6-nonadienal from unsaturated fatty acids using cucumber as the crude enzyme source.